Marek Eliáš - publikace

hlavní publikace (články v mezinárodních recenzovaných časopisech, kapitoly v monografiích):

Eliáš M, Neustupa J (2013) Phylum Eustigmatophyta. In: Margulis L (ed), Handbook of Protoctista, 2nd edition. Jones & Bartlett Learning, in press

Eliáš M, Neustupa J, Pažoutová M, Škaloud P (2013) A case of taxonomic inflation in coccoid algae: Ellipsoidion parvum and Neocystis vischeri are conspecific with Neocystis (=Nephrodiella) brevis (Chlorophyta, Trebouxiophyceae). Phytotaxa in press

Kaufnerová V, Eliáš M (2013) The demise of the genus Scotiellopsis Vinatzer (Chlorophyta). Nova Hedwigia in press

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJM, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale C, Hempel F, Henrissat B, Höppner MP, Ishida KI, Kim E, Kořený L, Kroth PG, Liu Y, Malik SH, Maier UG, McRose D, Mock T, Neilson JAD, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM (2012) Algal nuclear genomes reveal evolutionary mosaicism and fate of nucleomorphs. Nature 492:59-65.

Cock JM, Sterck L, Ahmed S, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Arun A, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corguillé GL, Corre E, Dartevelle L, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CMM, Godfroy O, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Luthringer R, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Macaisne N, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Scornet D, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, Von Dassow P, Yamagishi T, Rouzé P, Van De Peer Y, Wincker P (2012) The Ectocarpus Genome and Brown Algal Genomics. Advances in Botanical Research 64:141-184.

Elias M, Brighouse A, Gabernet-Castello C, Field MC, Dacks JB (2012) Sculpting the endomembrane system in deep time: High resolution phylogenetics of Rab GTPases. Journal of Cell Science 125:2500-2508.

Fulnečková J, Hasíková T, Fajkus J, Lukešová A, Eliáš M, Sýkorová E (2012) Dynamic evolution of telomeric sequences in the green algal order Chlamydomonadales. Genome Biology and Evolution 4:248-264.

Zambounis A, Elias M, Sterck L, Maumus F, Gachon CMM (2012) Highly dynamic exon shuffling in candidate pathogen receptors...What if brown algae were capable of adaptive immunity? Molecular Biology and Evolution 29:1263-1276.

Přibyl P, Eliáš M, Cepák V, Lukavský J, Kaštánek P (2012) Zoosporogenesis, morphology, ultrastructure, pigment composition, and phylogenetic position of Trachydiscus minutus (Eustigmatophyceae, Heterokontophyta). Journal of Phycology 48:231-242.

Eliáš M, Klimeš V (2012) Rho GTPases: deciphering the evolutionary history of a complex protein family. Methods in Molecular Biology 827:13–34.

Němcová Y, Eliáš M, Škaloud P, Neustupa J, Hodač L (2011) Jenufa gen. nov., a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing. Journal of Phycology 47:928–938.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, Depamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, Debarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga SI, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riano-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sorensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theißen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV (2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332:960-963.

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Madan Babu M, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm R, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, and Grigoriev I (2011) Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biology 12:R20.

Vlahou G, Elias M, von Kleist-Retzow JC, Wiesner RJ, and Rivero F (2011) Non-metazoan Ras related GTPases of the Miro family are not required for mitochondrial transport: functional analysis of the Dictyostelium discoideum ortholog. European Journal of Cell Biology 90:342–355.

Neustupa J, Eliáš M, Škaloud P, Němcová Y and Šejnohová L (2011) Xylochloris irregularis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga. Phycologia 50: 57-66.

Elias M (2010) Patterns and processes in the evolution of the eukaryotic endomembrane system. Molecular Membrane Biology 27:469-489.

Cock JM, 25 co-authors, Elias M, 47 co-authors (2010) The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465:617-621.

Eliáš M, Němcová Y, Škaloud P, Neustupa J, Kaufnerová V and Šejnohová L (2010) Hylodesmus singaporensis gen. et sp. nov., a new autosporine subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore. International Journal of Systematic and Evolutionary Microbiology 60:1224-1235.

Elias M and Archibald JM (2009) Sizing up the genomic footprint of endosymbiosis. BioEssays 31:1273-1279.

Eliáš M and Neustupa J (2009) Pseudomarvania gen. nov. (Chlorophyta, Trebouxiophyceae), a new genus for the “budding” subaerial green algae Marvania aerophytica Neustupa & Šejnohová and Stichococcus ampulliformis Handa. Fottea 9:169-177.

Neustupa J, Němcová Y, Eliáš M and Škaloud P (2009) Kalinella bambusicola gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel coccoid Chlorella-like subaerial alga from Southeast Asia. Phycological Research 57:159-169.

Elias M, Patron NJ and Keeling PJ (2009) The RAB Family GTPase Rab1A from Plasmodium falciparum Defines a Unique Paralog Shared by Chromalveolates and Rhizaria. Journal of Eukaryotic Microbiology 56:348-356.

Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, Elias M, Idnurm A, Lang BF, Sone T, Abe A, Calvo SE, Corrochano LM, Engels R, Fu J, Hansberg W, Kim JM, Kodira CD, Koehrsen MJ, Liu B, Miranda-Saavedra D, O’Leary S, Ortiz-Castellanos L, Poulter R, Rodriguez-Romero J, Ruiz-Herrera J, Shen YQ, Zeng Q, Galagan J, Birren BW, Cuomo CA and Wickes BL (2009) Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication. PLoS Genetics 5:e1000549.

Elias M and Archibald JM (2009) The RJL family of small GTPases is an ancient eukaryotic invention probably functionally associated with the flagellar apparatus. Gene 442:63-72.

Eliáš M, Škaloud P and Neustupa J (2008) Elliptochloris bilobata var. corticola var. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccal green alga. Biologia 63: 787-794.

Elias M (2008) The guanine nucleotide exchange factors Sec2 and PRONE: candidate synapomorphies for the Opisthokonta and the Archaeplastida. Molecular Biology and Evolution 25:1526-1529.

Elias M and Novotny M (2008) cpRAS: a novel circularly permuted RAS-like GTPase domain with a highly scattered phylogenetic distribution. Biology Direct 3:21.

Merchant SS, 73 co-authors, Elias M, 42 co-authors (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318:245-250.

Neustupa J, Eliáš M and Šejnohová L (2007) A taxonomic study of two Stichococcus (Trebouxiophyceae, Chlorophyta) species with a starch-enveloped pyrenoid. Nova Hedwigia 84:51-63.

Synek L, Schlager N, Eliáš M, Quentin M, Hauser MT and Žárský V (2006) AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development. Plant Journal 48:54-72.

Kahn RA, Cherfils J, Elias M, Lovering R, Munro S, Schurmann A (2006) Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins. Journal of Cell Biology 172:645-650.

Hála M, Eliáš M and Žárský V (2005) A specific feature of the angiosperm Rab escort protein (REP) and evolution of the REP/GDI superfamily. Journal of Molecular Biology 348:1299-1313.

Eliáš M, Drdová E, Žiak D, Bavlnka B, Hála M, Cvrčková F, Soukupová H and Žárský V (2003) The exocyst complex in plants. Cell Biology International 27:199-201.

Potocký M, Eliáš M, Profotová B, Novotná Z, Valentová O and Žárský V (2003) Phosphatidic acid produced by phospholipase D is required for tobacco pollen tube growth. Planta 217:122-30.

Eliáš M, Potocký M, Cvrčková F and Žárský V (2002) Molecular Diversity of Phospholipase D in Angiosperms. BMC Genomics 3:2.

Eliáš M, Cvrčková F, Obermeyer G and Žárský V (2001) Microinjection of Guanine Nucleotide Analogues into Lily Pollen Tubes Results in Isodiametric Tip Expansion. Plant Biology 3:489-492.

Cvrčková F, Eliáš M, Hála M, Obermeyer G and Žárský V (2001) Small GTPases and conserved signalling pathways in plant cell morphogenesis: from exocytosis to the Exocyst. In: A. Geitmann and I. Brent Heath (eds.), Cell Biology of Plant and Fungal Tip Growth, IOS Press, Amsterdam, 2001.

další publikace (popularizační články, recenze atd.):

Čepička I, Eliáš M, Hampl V (2010) Řád z Chaosu. Rozmanitost protistů z pohledu 21. století. Vesmír 89:464-469.

Eliáš M (2009) Vznik fotosyntetizujících eukaryot ve světle srovnávací genomiky. Živa 5/2009:200-203.

Kolektiv autorů et Eliáš M (2004) Modelové otázky k přijímacím zkouškám – Biologie. Černý J (ed.), nakladatelství Čermák, Praha 2004

Eliáš M (2004) Starý Nový přehled biologie. Vesmír 83:411-415. (recenze knihy S. Rosypal a kol.: Nový přehled biologie, Sciencia, Praha 2003)

Aixnerová R, Barčiová L, Eliáš M, Hájek J, Koutecký P (2001) Genetika a evoluce. Přípravný text kategorie A, B Biologické olympiády, 36. ročník - 2001/2002. Institut dětí a mládeže MŠMT, Praha, 2001.

Cvrčková F a Eliáš M (2000) Od dat k informaci: klonování in silico. Biologické listy 65:157-161.

publikace v přípravě:

Gaysina L, Němcová Y, Škaloud P, Ševčíková T, Eliáš M (201x) A novel ultrastructural feature in Chloropyrularia uraliensis gen. et sp. nov., a new green coccoid alga (Trebouxiophyceae, Chlorophyta) isolated from soil in South Urals. Journal of Systematics and Evolution in review

Schlacht A, Mowbrey K, Elias M, Kahn RA, Dacks JB (201x) Ancient complexity, opisthokont plasticity and discovery of the 11th subfamily in the Arf GAP proteins. Traffic submitted